Transcript: lnc-SAMD11-4:3

Basic information

LNCipedia transcript ID: lnc-SAMD11-4:3 
LNCipedia gene ID: lnc-SAMD11-4
Location (hg38): chr1:821031-823595
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 575 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000779; NONHSAT000155
Alternative gene names: XLOC_000008; linc-SAMD11-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 3.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SAMD11-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL669831.1-5:2
3.1 lnc-AL669831.1-4:2
4.0 lnc-AL669831.1-4:2
4.1 lnc-AL669831.1-4:2
5.0 lnc-AL669831.1-4:2
5.1 lnc-VAMP3-126:2
5.2 lnc-SAMD11-4:3