Transcript: lnc-SALL1-12:2

Basic information

LNCipedia transcript ID: lnc-SALL1-12:2 
LNCipedia gene ID: lnc-SALL1-12
Location (hg38): chr16:51635138-51637125
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 496 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT142480; FPKM1_group_11642_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.9984 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SALL1-12:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-152O14.5.1-3:1
4.0 lnc-RP11-152O14.5.1-3:1
4.1 lnc-RP11-152O14.5.1-3:1
5.0 lnc-RP11-152O14.5.1-3:1
5.1 lnc-CFAP20-121:2
5.2 lnc-SALL1-12:2