Transcript: lnc-SAA2-SAA4-1:1

Basic information

LNCipedia transcript ID: lnc-SAA2-SAA4-1:1 
LNCipedia gene ID: lnc-SAA2-SAA4-1
Location (hg38): chr11:18231423-18248635
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 743 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000524555.1; SAA2-SAA4-001; OTTHUMT00000389977.1
Alternative gene names: ENSG00000255071.1; SAA2-SAA4; OTTHUMG00000166482.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 829.0124 coding 
CPAT coding probability 95.21% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SAA2-SAA4-1:1 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SAA2-1:1
4.0 lnc-SAA2-1:1
4.1 lnc-SAA2-1:1
5.0 lnc-SAA2-1:1
5.1 lnc-TPH1-5:1
5.2 lnc-SAA2-SAA4-1:1