Transcript: lnc-RWDD3-7:2

Basic information

LNCipedia transcript ID: lnc-RWDD3-7:2 
LNCipedia gene ID: lnc-RWDD3-7
Location (hg38): chr1:95989807-96022866
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 861 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000256; ENST00000412513; ENST00000412513.1; RP11-147C23.1-004; OTTHUMT00000029474.1; NONHSAT004689
Alternative gene names: XLOC_000312; linc-PTBP2-2; ENSG00000237435; RP11-147C23.1; ENSG00000237435.1; OTTHUMG00000010691.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.9241 non-coding 
CPAT coding probability 2.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RWDD3-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTBP2-2:2
3.1 lnc-RWDD3-7:2
4.0 lnc-RWDD3-7:2
4.1 lnc-RWDD3-7:2
5.0 lnc-RWDD3-7:2
5.1 lnc-BTBD8-51:3
5.2 lnc-RWDD3-7:2