Transcript: lnc-RTN2-1:1

Basic information

LNCipedia transcript ID: lnc-RTN2-1:1 
LNCipedia gene ID: lnc-RTN2-1
Location (hg38): chr19:45473083-45475156
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1981 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000501583; NONHSAT066781
Alternative gene names: ENSG00000248000; AC138128.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.7893 non-coding 
CPAT coding probability 1.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RTN2-1:1 yes no no no

Available literature

  1. Chen (2014), The novel long noncoding RNA AC138128.1 may be a predictive biomarker in gastric cancer., Med. Oncol.
  2. Liu (2014), LncRNAs expression signatures of hepatocellular carcinoma revealed by microarray., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RTN2-1:1
3.1 lnc-RTN2-1:1
4.0 lnc-RTN2-1:1
4.1 lnc-RTN2-1:1
5.0 lnc-RTN2-1:1
5.1 lnc-GPR4-4:1
5.2 lnc-RTN2-1:1