Transcript: lnc-RTCB-5:1

Basic information

LNCipedia transcript ID: lnc-RTCB-5:1 
LNCipedia gene ID: lnc-RTCB-5
Ensembl Gene ID: ENSG00000234626
Ensembl Transcript ID: ENST00000446543
Location (hg38): chr22:32327171-32343105
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 361 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029472; ENST00000446543.1; RP1-149A16.12-001; OTTHUMT00000129026.1; NONHSAT084960
Alternative gene names: XLOC_014349; linc-SLC5A4; ENSG00000234626.1; RP1-149A16.12; OTTHUMG00000058271.1; AL021937.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.5326 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RTCB-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RFPL3-AS1-1:1
3.1 lnc-RFPL3-AS1-1:1
4.0 lnc-RFPL3-AS1-5:1
4.1 lnc-RFPL3-AS1-5:1
5.0 lnc-RFPL3-AS1-5:1
5.1 lnc-SYN3-12:1
5.2 lnc-RTCB-5:1