Transcript: lnc-RSPH1-1:1

Basic information

LNCipedia transcript ID: lnc-RSPH1-1:1 
LNCipedia gene ID: lnc-RSPH1-1
Ensembl Gene ID: ENSG00000235772
Ensembl Transcript ID: ENST00000442605
Location (hg38): chr21:42560374-42561934
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 575 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442605.1; AP001625.6-001; OTTHUMT00000195402.1; NONHSAT082337
Alternative gene names: ENSG00000235772.1; AP001625.6; OTTHUMG00000086815.1; AP001625.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.7843 non-coding 
CPAT coding probability 19.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RSPH1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RSPH1-1:1
4.0 lnc-RSPH1-1:1
4.1 lnc-RSPH1-1:1
5.0 lnc-RSPH1-1:1
5.1 lnc-POFUT2-58:1
5.2 lnc-RSPH1-1:1