Transcript: lnc-RRP1B-1:1

Basic information

LNCipedia transcript ID: lnc-RRP1B-1:1 
LNCipedia gene ID: lnc-RRP1B-1
Location (hg38): chr21:43721692-43732265
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 342 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000438837.1; AP001052.9-001; OTTHUMT00000195691.1; NONHSAT082442
Alternative gene names: ENSG00000241238.1; AP001052.9; OTTHUMG00000086887.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.5583 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RRP1B-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RRP1B-1:1
4.0 lnc-RRP1B-1:1
4.1 lnc-RRP1B-1:1
5.0 lnc-RRP1B-1:1
5.1 lnc-RRP1-4:1
5.2 lnc-RRP1B-1:1