Transcript: lnc-RRM2-3:2

Basic information

LNCipedia transcript ID: lnc-RRM2-3:2 
LNCipedia gene ID: lnc-RRM2-3
Ensembl Gene ID: ENSG00000163009
Ensembl Transcript ID: ENST00000619640
Location (hg38): chr2:10141883-10210597
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 480 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000619640.3
Alternative gene names: ENSG00000163009.8; C2orf48; ENSG00000163009.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -97.1756 non-coding 
CPAT coding probability 55.66% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RRM2-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C2orf48-3:2
4.1 lnc-C2orf48-3:2
5.0 lnc-C2orf48-3:2
5.1 lnc-SNX17-198:2
5.2 lnc-RRM2-3:2