Transcript: lnc-RPS4Y1-6:3

Basic information

LNCipedia transcript ID: lnc-RPS4Y1-6:3 
LNCipedia gene ID: lnc-RPS4Y1-6
Location (hg38): chrY:1401921-1415426
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1756 bp
Exons: 6
Sources: Gencode v13; NONCODE v4
Alternative transcript names: ENSTR0000419737.1; ASMTL-AS1-001; OTTHUMT00000055590.2; NONHSAT139271
Alternative gene names: ENSGR0000236017.2; ASMTL-AS1; OTTHUMG00000021056.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 74.0629 coding 
CPAT coding probability 83.13% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RPS4Y1-6:3 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPS4Y1-6:3
4.0 lnc-RPS4Y1-6:3
4.1 lnc-RPS4Y1-6:3
5.0 lnc-RPS4Y1-6:3
5.1 lnc-TGIF2LY-15:5
5.2 lnc-RPS4Y1-6:3