Transcript: lnc-RPS4Y1-5:1

Basic information

LNCipedia transcript ID: lnc-RPS4Y1-5:1 
LNCipedia gene ID: lnc-RPS4Y1-5
Location (hg38): chrY:1627746-1636463
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 510 bp
Exons: 2
Sources: Gencode v13; NONCODE v4
Alternative transcript names: ENSTR0000509780.1; RP13-297E16.3-001; OTTHUMT00000055615.1; NONHSAT139273
Alternative gene names: ENSGR0000249358.1; RP13-297E16.3; OTTHUMG00000021066.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.0178 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS4Y1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPS4Y1-5:1
4.0 lnc-RPS4Y1-5:1
4.1 lnc-RPS4Y1-5:1
5.0 lnc-RPS4Y1-5:1
5.1 lnc-TGIF2LY-14:1
5.2 lnc-RPS4Y1-5:1