Transcript: lnc-RPS27A-1:26

Basic information

LNCipedia transcript ID: lnc-RPS27A-1:26 
LNCipedia gene ID: lnc-RPS27A-1
Ensembl Gene ID: ENSG00000240401
Ensembl Transcript ID: ENST00000625627
Location (hg38): chr2:55314193-55315455
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 252 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000625627.2
Alternative gene names: ENSG00000240401.8; AC012358.8; AC012358.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -161.1687 non-coding 
CPAT coding probability 6.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS27A-1:26 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RPS27A-1:26
4.1 lnc-RPS27A-1:26
5.0 lnc-RPS27A-1:26
5.1 lnc-PAPOLG-69:26
5.2 lnc-RPS27A-1:26