Transcript: lnc-RPS24-3:7

Basic information

LNCipedia transcript ID: lnc-RPS24-3:7 
LNCipedia gene ID: lnc-RPS24-3
Location (hg38): chr10:78528751-78674967
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 343 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000421324; ENST00000421324.1; RP11-90J7.3-006; OTTHUMT00000363547.1; NONHSAT015078
Alternative gene names: ENSG00000230417; RP11-90J7.3; ENSG00000230417.4; OTTHUMG00000018555.2; ENSG00000230417.6; LINC00856


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.2411 non-coding 
CPAT coding probability 18.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS24-3:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZMIZ1-1:7
3.1 lnc-RPS24-3:7
4.0 lnc-RPS24-3:7
4.1 lnc-RPS24-3:7
5.0 lnc-RPS24-3:7
5.1 lnc-MTRNR2L5-236:38
5.2 lnc-RPS24-3:7