Transcript: lnc-RPS24-3:28

Basic information

LNCipedia transcript ID: lnc-RPS24-3:28 
LNCipedia gene ID: lnc-RPS24-3
Ensembl Gene ID: ENSG00000230417
Ensembl Transcript ID: ENST00000459633
Location (hg38): chr10:78267442-78330595
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 548 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000459633; ENST00000459633.1; LINC00595-004; OTTHUMT00000048931.1; NONHSAT015067
Alternative gene names: ENSG00000227136; C10orf101; ENSG00000227136.2; LINC00595; OTTHUMG00000018552.2; ENSG00000230417.11; LINC00856


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.9763 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS24-3:28 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPS24-4:4
3.1 lnc-RPS24-5:4
4.0 lnc-RPS24-3:28
4.1 lnc-RPS24-3:28
5.0 lnc-RPS24-3:28
5.1 lnc-MTRNR2L5-236:35
5.2 lnc-RPS24-3:28