Transcript: lnc-RPP40-4:1

Basic information

LNCipedia transcript ID: lnc-RPP40-4:1 
LNCipedia gene ID: lnc-RPP40-4
Location (hg38): chr6:4991377-4999211
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1283 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_3097_chr6:4991610-4999445_adrenal
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.3733 non-coding 
CPAT coding probability 14.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPP40-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPP40-4:1
4.0 lnc-RPP40-4:1
4.1 lnc-RPP40-4:1
5.0 lnc-RPP40-4:1
5.1 lnc-ECI2-67:1
5.2 lnc-RPP40-4:1