Transcript: lnc-RPP30-3:1

Basic information

LNCipedia transcript ID: lnc-RPP30-3:1 
LNCipedia gene ID: lnc-RPP30-3
Ensembl Gene ID: ENSG00000225519
Ensembl Transcript ID: ENST00000412362
Location (hg38): chr10:90994620-91006390
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 380 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017857; ENST00000412362; ENST00000412362.1; RP11-236B18.2-001; OTTHUMT00000049359.1; NONHSAT015616
Alternative gene names: XLOC_008560; linc-PCGF5-2; ENSG00000225519; RP11-236B18.2; ENSG00000225519.1; OTTHUMG00000018736.1; AL365434.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.3272 non-coding 
CPAT coding probability 3.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPP30-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPP30-3:1
3.1 lnc-RPP30-3:1
4.0 lnc-RPP30-3:1
4.1 lnc-RPP30-3:1
5.0 lnc-RPP30-3:1
5.1 lnc-SMC3-265:1
5.2 lnc-RPP30-3:1