Transcript: lnc-RPP30-2:5

Basic information

LNCipedia transcript ID: lnc-RPP30-2:5 
LNCipedia gene ID: lnc-RPP30-2
RefSeq ID: NR_131214
Location (hg38): chr10:90947300-90992132
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 504 bp
Exons: 6
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_131214.1
Alternative gene names: XLOC_008559


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -40.9174 non-coding 
CPAT coding probability 13.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPP30-2:5 no no no no

Available literature

  1. Lee (2014), Long noncoding RNAs as putative biomarkers for prostate cancer detection., J Mol Diagn


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SMC3-268:3
5.1 lnc-SMC3-268:3
5.2 lnc-RPP30-2:5