Transcript: lnc-RPLP1-12:25

Basic information

LNCipedia transcript ID: lnc-RPLP1-12:25 
HGNC Gene Symbol: lnc-RPLP1-12    
HGNC Full Gene Name: downregulated RNA in cancer, inhibitor of cell invasion and migration
Ensembl Gene ID: ENSG00000245750
Ensembl Transcript ID: ENST00000644274
Location (hg38): chr15:69561957-69680396
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1561 bp
Exons: 9
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000644274.1
Alternative gene names: ENSG00000245750.8; DRAIC


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -49.9817 non-coding 
CPAT coding probability 36.45% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RPLP1-12:25 no no no no

Available literature

  1. Ding (2015), Genetics of RA susceptibility, what comes next?, RMD Open
  2. Sakurai (2015), The lncRNA DRAIC/PCAT29 Locus Constitutes a Tumor-Suppressive Nexus., Mol. Cancer Res.
  3. Malik (2014), The lncRNA PCAT29 inhibits oncogenic phenotypes in prostate cancer., Mol. Cancer Res.
  4. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-NOX5-12:25
5.1 lnc-NOX5-12:25
5.2 lnc-RPLP1-12:25