Transcript: lnc-RPLP1-12:23

Basic information

LNCipedia transcript ID: lnc-RPLP1-12:23 
LNCipedia gene ID: lnc-RPLP1-12
RefSeq ID: NR_026979
Location (hg38): chr15:69561720-69571440
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1705 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000498938; TCONS_00023188; NONHSAT046965; NR_026979; NR_026979.1
Alternative gene names: ENSG00000245750; XLOC_011294; linc-LRRC49-4; AC100826.1; ; DRAIC


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.7556 non-coding 
CPAT coding probability 48.14% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RPLP1-12:23 no no no no

Available literature

  1. Ding (2015), Genetics of RA susceptibility, what comes next?, RMD Open
  2. Sakurai (2015), The lncRNA DRAIC/PCAT29 Locus Constitutes a Tumor-Suppressive Nexus., Mol. Cancer Res.
  3. Malik (2014), The lncRNA PCAT29 inhibits oncogenic phenotypes in prostate cancer., Mol. Cancer Res.
  4. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPLP1-1:4
3.1 lnc-RPLP1-1:10
4.0 DRAIC:15
4.1 DRAIC:15
5.0 DRAIC:15
5.1 lnc-NOX5-12:23
5.2 lnc-RPLP1-12:23