Transcript: lnc-RPL13-1:7

Basic information

LNCipedia transcript ID: lnc-RPL13-1:7 
LNCipedia gene ID: lnc-RPL13-1
Location (hg38): chr16:89491318-89499265
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 525 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024914; NONHSAT144531
Alternative gene names: XLOC_011834; linc-SPG7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.6528 non-coding 
CPAT coding probability 8.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPL13-1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPL13-1:1
3.1 lnc-RPL13-1:1
4.0 lnc-SPG7-1:6
4.1 lnc-SPG7-1:6
5.0 lnc-SPG7-1:6
5.1 lnc-MAP1LC3B-34:3
5.2 lnc-RPL13-1:7