Transcript: lnc-RPIA-2:1

Basic information

LNCipedia transcript ID: lnc-RPIA-2:1 
LNCipedia gene ID: lnc-RPIA-2
Ensembl Gene ID: ENSG00000234028
Ensembl Transcript ID: ENST00000453008
Location (hg38): chr2:88627539-88631819
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1614 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453008; ENST00000453008.2; AC062029.1-001; OTTHUMT00000338242.2; NONHSAT072201
Alternative gene names: ENSG00000234028; AC062029.1; ENSG00000234028.2; OTTHUMG00000155049.2; ENSG00000234028.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.2542 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPIA-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPIA-2:1
3.1 lnc-RPIA-2:1
4.0 lnc-RPIA-2:1
4.1 lnc-RPIA-2:1
5.0 lnc-RPIA-2:1
5.1 lnc-POLE4-223:3
5.2 lnc-RPIA-2:1