Transcript: lnc-RPH3AL-1:5

Basic information

LNCipedia transcript ID: lnc-RPH3AL-1:5 
LNCipedia gene ID: lnc-RPH3AL-1
Ensembl Gene ID: ENSG00000241525
Ensembl Transcript ID: ENST00000466740
RefSeq ID: NR_136407
Location (hg38): chr17:404535-414023
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 388 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000466740.2; AC108004.3-001; OTTHUMT00000255177.3; NONHSAT144707; NR_136407.1
Alternative gene names: ENSG00000241525.2; AC108004.3; OTTHUMG00000132132.3; ENSG00000241525.3; ENSG00000241525.4; AC141424.1; LOC105371430


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.1503 non-coding 
CPAT coding probability 8.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPH3AL-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM101B-1:1
4.0 lnc-FAM101B-1:1
4.1 lnc-FAM101B-1:1
5.0 lnc-FAM101B-1:1
5.1 lnc-RPH3AL-1:2
5.2 lnc-RPH3AL-1:5