Transcript: lnc-RPA3-2:4

Basic information

LNCipedia transcript ID: lnc-RPA3-2:4 
LNCipedia gene ID: lnc-RPA3-2
Location (hg38): chr7:7738524-7742574
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1061 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000418534.3
Alternative gene names: ENSG00000234718.6; AC007161.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 63.3753 coding 
CPAT coding probability 9.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RPA3-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RPA3-2:4
4.1 lnc-RPA3-2:4
5.0 lnc-RPA3-2:4
5.1 lnc-RNF216-37:2
5.2 lnc-RPA3-2:4