Transcript: lnc-RP9-2:2

Basic information

LNCipedia transcript ID: lnc-RP9-2:2 
LNCipedia gene ID: lnc-RP9-2
Ensembl Gene ID: ENSG00000236494
Ensembl Transcript ID: ENST00000420185
Location (hg38): chr7:33793168-33803130
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1589 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013152; ENST00000420185; ENST00000420185.1; RP11-89N17.4-001; OTTHUMT00000343606.1; NONHSAT120030
Alternative gene names: XLOC_006404; linc-RP9-2; ENSG00000236494; RP11-89N17.4; ENSG00000236494.1; OTTHUMG00000156244.1; AC008080.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.089 non-coding 
CPAT coding probability 6.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RP9-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP9-2:2
3.1 lnc-RP9-2:2
4.0 lnc-RP9-2:2
4.1 lnc-RP9-2:2
5.0 lnc-RP9-2:2
5.1 lnc-LSM5-18:7
5.2 lnc-RP9-2:2