Transcript: lnc-RP9-1:1

Basic information

LNCipedia transcript ID: lnc-RP9-1:1 
LNCipedia gene ID: lnc-RP9-1
Ensembl Gene ID: ENSG00000227481
Ensembl Transcript ID: ENST00000455149
Location (hg38): chr7:33730292-33732064
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 577 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013151; ENST00000455149.1; RP11-89N17.2-001; OTTHUMT00000343604.1; NONHSAT120029
Alternative gene names: XLOC_006403; linc-RP9-1; ENSG00000227481.1; RP11-89N17.2; OTTHUMG00000156242.1; AC008080.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.9929 non-coding 
CPAT coding probability 27.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RP9-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP9-1:1
3.1 lnc-RP9-1:1
4.0 lnc-RP9-1:1
4.1 lnc-RP9-1:1
5.0 lnc-RP9-1:1
5.1 lnc-LSM5-17:1
5.2 lnc-RP9-1:1