Transcript: lnc-ROCK2-3:4

Basic information

LNCipedia transcript ID: lnc-ROCK2-3:4 
LNCipedia gene ID: lnc-ROCK2-3
Ensembl Gene ID: ENSG00000145063
Ensembl Transcript ID: ENST00000536743
Location (hg38): chr2:11105317-11132176
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1422 bp
Exons: 8
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000536743; ENST00000536743.1; AC062028.1-002; OTTHUMT00000280499.1; ENST00000536743.5
Alternative gene names: ENSG00000145063; AC062028.1; ENSG00000145063.9; OTTHUMG00000119056.3; ENSG00000145063.10; ENSG00000145063.14


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.8094 non-coding 
CPAT coding probability 34.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ROCK2-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ROCK2-3:4
3.1 lnc-ROCK2-3:4
4.0 lnc-ROCK2-3:4
4.1 lnc-ROCK2-3:4
5.0 lnc-ROCK2-3:4
5.1 lnc-RAD51AP2-91:7
5.2 lnc-ROCK2-3:4