Transcript: lnc-ROBO2-2:1

Basic information

LNCipedia transcript ID: lnc-ROBO2-2:1 
LNCipedia gene ID: lnc-ROBO2-2
Ensembl Gene ID: ENSG00000240573
Ensembl Transcript ID: ENST00000461186
Location (hg38): chr3:78087404-78092270
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 554 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005545; ENST00000461186; ENST00000461186.1; RP11-354H21.2-001; OTTHUMT00000352393.1; NONHSAT090572
Alternative gene names: XLOC_002714; linc-CADM2-10; ENSG00000240573; RP11-354H21.2; ENSG00000240573.1; OTTHUMG00000158839.1; AC117462.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.7742 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ROBO2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ROBO2-2:1
3.1 lnc-ROBO2-2:1
4.0 lnc-ROBO2-2:1
4.1 lnc-ROBO2-2:1
5.0 lnc-ROBO2-2:1
5.1 lnc-ROBO2-2:1
5.2 lnc-ROBO2-2:1