Transcript: lnc-RNF38-5:1

Basic information

LNCipedia transcript ID: lnc-RNF38-5:1 
LNCipedia gene ID: lnc-RNF38-5
Location (hg38): chr9:36332950-36334972
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 388 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000426015; ENST00000426015.1; RP11-84P7.3-001; OTTHUMT00000052421.1; NONHSAT131010
Alternative gene names: ENSG00000224304; RP11-84P7.3; ENSG00000224304.1; OTTHUMG00000019904.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.7625 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF38-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNF38-1:1
3.1 lnc-RNF38-1:1
4.0 lnc-RNF38-5:1
4.1 lnc-RNF38-5:1
5.0 lnc-RNF38-5:1
5.1 lnc-CD72-32:1
5.2 lnc-RNF38-5:1