Transcript: lnc-RNF26-1:11

Basic information

LNCipedia transcript ID: lnc-RNF26-1:11 
LNCipedia gene ID: lnc-RNF26-1
Ensembl Gene ID: ENSG00000254854
Ensembl Transcript ID: ENST00000533253
RefSeq ID: NR_120587
Location (hg38): chr11:119729583-119739623
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 523 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000533253.1; CTD-2523D13.2-001; OTTHUMT00000388237.1; NONHSAT024685; NR_120587; NR_120587.1
Alternative gene names: ENSG00000254854.1; CTD-2523D13.2; OTTHUMG00000166179.1; AP003390.1; LOC102724301


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -259.364 non-coding 
CPAT coding probability 37.68% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RNF26-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2523D13.1.1-1:3
4.0 lnc-CTD-2523D13.1.1-1:3
4.1 lnc-CTD-2523D13.1.1-1:3
5.0 lnc-CTD-2523D13.1.1-1:3
5.1 lnc-HINFP-10:10
5.2 lnc-RNF26-1:11