Transcript: lnc-RNF144A-2:2

Basic information

LNCipedia transcript ID: lnc-RNF144A-2:2 
LNCipedia gene ID: lnc-RNF144A-2
Location (hg38): chr2:7421265-7450254
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2225 bp
Exons: 8
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000435062; ENST00000435062.1; AC013460.1-001; OTTHUMT00000323247.1; NONHSAT068948
Alternative gene names: ENSG00000229727; AC013460.1; ENSG00000229727.1; OTTHUMG00000151593.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.7305 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF144A-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNF144A-2:2
3.1 lnc-RNF144A-2:2
4.0 lnc-RNF144A-2:2
4.1 lnc-RNF144A-2:2
5.0 lnc-RNF144A-2:2
5.1 lnc-SNX17-238:4
5.2 lnc-RNF144A-2:2