Transcript: lnc-RNF135-1:22

Basic information

LNCipedia transcript ID: lnc-RNF135-1:22 
LNCipedia gene ID: lnc-RNF135-1
Location (hg38): chr17:30600420-30637555
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6092 bp
Exons: 6
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA566:2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.3134 non-coding 
CPAT coding probability 66.86% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RNF135-1:22 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RNF135-1:22
4.1 lnc-RNF135-1:22
5.0 lnc-RNF135-1:22
5.1 lnc-NSRP1-30:18
5.2 lnc-RNF135-1:22