Transcript: lnc-RNF114-2:3

Basic information

LNCipedia transcript ID: lnc-RNF114-2:3 
LNCipedia gene ID: lnc-RNF114-2
Location (hg38): chr20:49915809-49916971
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1163 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000053515.1|ENCT00000262260.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -84.5595 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF114-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RNF114-2:3
5.0 lnc-RNF114-2:3
5.1 lnc-SNAI1-6:3
5.2 lnc-RNF114-2:3