Transcript: lnc-RNASEH1-5:1

Basic information

LNCipedia transcript ID: lnc-RNASEH1-5:1 
LNCipedia gene ID: lnc-RNASEH1-5
Ensembl Gene ID: ENSG00000229550
Ensembl Transcript ID: ENST00000442831
Location (hg38): chr2:4136644-4140731
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 607 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003166; ENST00000442831; ENST00000442831.1; AC012445.1-001; OTTHUMT00000322863.1; NONHSAT068783
Alternative gene names: XLOC_001955; linc-RNASEH1-6; ENSG00000229550; AC012445.1; ENSG00000229550.1; OTTHUMG00000151487.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.6459 non-coding 
CPAT coding probability 2.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNASEH1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNASEH1-3:1
3.1 lnc-RNASEH1-5:1
4.0 lnc-RNASEH1-5:1
4.1 lnc-RNASEH1-5:1
5.0 lnc-RNASEH1-5:1
5.1 lnc-RAD51AP2-171:1
5.2 lnc-RNASEH1-5:1