Transcript: lnc-RNASEH1-1:10

Basic information

LNCipedia transcript ID: lnc-RNASEH1-1:10 
LNCipedia gene ID: lnc-RNASEH1-1
Ensembl Gene ID: ENSG00000242282
Ensembl Transcript ID: ENST00000438482
Location (hg38): chr2:3533224-3536869
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 914 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003160; ENST00000438482.1; AC108488.4-005; OTTHUMT00000322761.1; NONHSAT068728
Alternative gene names: XLOC_001952; linc-ADI1; ENSG00000242282.2; AC108488.4; OTTHUMG00000151418.2; ENSG00000242282.6; AC108488.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.3818 non-coding 
CPAT coding probability 4.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNASEH1-1:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP13-512J5.1.1-1:2
3.1 lnc-RP13-512J5.1.1-1:3
4.0 lnc-RP13-512J5.1.1-1:3
4.1 lnc-RP13-512J5.1.1-1:3
5.0 lnc-RP13-512J5.1.1-1:3
5.1 lnc-RAD51AP2-180:4
5.2 lnc-RNASEH1-1:10