Transcript: lnc-RNASE3-1:2

Basic information

LNCipedia transcript ID: lnc-RNASE3-1:2 
LNCipedia gene ID: lnc-RNASE3-1
Ensembl Gene ID: ENSG00000136315
Ensembl Transcript ID: ENST00000555624
Location (hg38): chr14:20919361-20920299
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 337 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555624; ENST00000555624.1; RP11-84C10.2-001; OTTHUMT00000411341.1; NONHSAT035617
Alternative gene names: ENSG00000136315; RP11-84C10.2; ENSG00000136315.3; OTTHUMG00000171041.1; ENSG00000136315.4; AL355922.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.7068 non-coding 
CPAT coding probability 8.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNASE3-1:2 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNASE3-1:2
3.1 lnc-RNASE3-1:2
4.0 lnc-RNASE3-1:2
4.1 lnc-RNASE3-1:2
5.0 lnc-RNASE3-1:2
5.1 lnc-OR4K15-32:2
5.2 lnc-RNASE3-1:2