Transcript: lnc-RNASE1-1:4

Basic information

LNCipedia transcript ID: lnc-RNASE1-1:4 
LNCipedia gene ID: lnc-RNASE1-1
Ensembl Gene ID: ENSG00000259130
Ensembl Transcript ID: ENST00000556197
Location (hg38): chr14:20870278-20873370
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 549 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556197; ENST00000556197.1; RP11-219E7.3-001; OTTHUMT00000411336.1; NONHSAT035611
Alternative gene names: ENSG00000259130; RP11-219E7.3; ENSG00000259130.1; OTTHUMG00000171037.1; AL133371.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.6748 non-coding 
CPAT coding probability 3.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNASE1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNASE1-1:3
3.1 lnc-RNASE1-1:4
4.0 lnc-RNASE1-1:4
4.1 lnc-RNASE1-1:4
5.0 lnc-RNASE1-1:4
5.1 lnc-ZNF219-13:4
5.2 lnc-RNASE1-1:4