Transcript: lnc-RMI1-2:3

Basic information

LNCipedia transcript ID: lnc-RMI1-2:3 
LNCipedia gene ID: lnc-RMI1-2
Ensembl Gene ID: ENSG00000227463
Ensembl Transcript ID: ENST00000423515
Location (hg38): chr9:84063443-84094577
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2007 bp
Exons: 9
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT132770; ENST00000423515.2
Alternative gene names: ENSG00000227463.2; RP11-158D2.2; AL390838.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.2821 non-coding 
CPAT coding probability 5.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RMI1-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RMI1-2:3
4.0 lnc-RMI1-2:3
4.1 lnc-RMI1-2:3
5.0 lnc-RMI1-2:3
5.1 lnc-SECISBP2-76:2
5.2 lnc-RMI1-2:3

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