Transcript: lnc-RMDN2-3:14

Basic information

LNCipedia transcript ID: lnc-RMDN2-3:14 
LNCipedia gene ID: lnc-RMDN2-3
Ensembl Gene ID: ENSG00000236213
Ensembl Transcript ID: ENST00000419425
Location (hg38): chr2:37600136-37646698
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 548 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419425.1; AC006369.2-001; OTTHUMT00000326758.1; NONHSAT070131
Alternative gene names: ENSG00000236213.1; AC006369.2; OTTHUMG00000152557.1; AC006369.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.1394 non-coding 
CPAT coding probability 6.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RMDN2-3:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-QPCT-3:4
4.0 lnc-QPCT-3:4
4.1 lnc-FAM82A1-3:16
5.0 lnc-FAM82A1-3:16
5.1 lnc-RASGRP3-35:15
5.2 lnc-RMDN2-3:14