Transcript: lnc-RIT2-2:13

Basic information

LNCipedia transcript ID: lnc-RIT2-2:13 
LNCipedia gene ID: lnc-RIT2-2
Ensembl Gene ID: ENSG00000267313
Ensembl Transcript ID: ENST00000592302
RefSeq ID: NR_002838
Location (hg38): chr18:41480271-41520597
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1713 bp
Exons: 6
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000592302.5; NR_002838.1
Alternative gene names: ENSG00000267313.7; KC6; AC021504.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -96.1919 non-coding 
CPAT coding probability 0.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RIT2-2:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RIT2-2:13
4.1 lnc-RIT2-2:13
5.0 lnc-RIT2-2:13
5.1 lnc-SMAD2-53:10
5.2 lnc-RIT2-2:13