Transcript: lnc-RIOX2-5:2

Basic information

LNCipedia transcript ID: lnc-RIOX2-5:2 
LNCipedia gene ID: lnc-RIOX2-5
Ensembl Gene ID: ENSG00000282527
Ensembl Transcript ID: ENST00000631985
Location (hg38): chr3:97800733-97821884
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 460 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000631985.1
Alternative gene names: ENSG00000282527.1; RP11-389G6.5; AC110491.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -122.9936 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RIOX2-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-MINA-5:2
4.1 lnc-MINA-5:2
5.0 lnc-MINA-5:2
5.1 lnc-GABRR3-5:2
5.2 lnc-RIOX2-5:2