Transcript: lnc-RIOX1-3:1

Basic information

LNCipedia transcript ID: lnc-RIOX1-3:1 
LNCipedia gene ID: lnc-RIOX1-3
Ensembl Gene ID: ENSG00000251393
Ensembl Transcript ID: ENST00000515412
Location (hg38): chr14:73462423-73477175
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 537 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515412; ENST00000515412.2; RP1-240K6.3-001; OTTHUMT00000414431.1; NONHSAT140170
Alternative gene names: ENSG00000251393; RP1-240K6.3; ENSG00000251393.3; OTTHUMG00000171606.2; AC005280.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -558.2786 non-coding 
CPAT coding probability 7.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RIOX1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACOT1-1:2
3.1 lnc-ACOT1-3:2
4.0 lnc-ACOT1-3:2
4.1 lnc-ACOT1-3:2
5.0 lnc-ACOT1-3:2
5.1 lnc-ACOT2-4:2
5.2 lnc-RIOX1-3:1