Transcript: lnc-RIMKLB-6:3

Basic information

LNCipedia transcript ID: lnc-RIMKLB-6:3 
LNCipedia gene ID: lnc-RIMKLB-6
Ensembl Gene ID: ENSG00000249790
Ensembl Transcript ID: ENST00000514568
Location (hg38): chr12:8788274-8795789
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1972 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514568; ENST00000514568.2; RP11-20D14.6-003; OTTHUMT00000399112.1; NONHSAT026369
Alternative gene names: ENSG00000249790; RP11-20D14.6; ENSG00000249790.2; OTTHUMG00000168221.2; AC092490.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 83.8737 coding 
CPAT coding probability 8.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RIMKLB-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RIMKLB-1:2
3.1 lnc-RIMKLB-1:3
4.0 lnc-RIMKLB-6:3
4.1 lnc-RIMKLB-6:3
5.0 lnc-RIMKLB-6:3
5.1 lnc-RIMKLB-6:3
5.2 lnc-RIMKLB-6:3