Transcript: lnc-RHOXF1-3:2

Basic information

LNCipedia transcript ID: lnc-RHOXF1-3:2 
LNCipedia gene ID: lnc-RHOXF1-3
Location (hg38): chrX:120236458-120245267
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2418 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00016927
Alternative gene names: XLOC_008225; linc-RHOXF1-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.2286 non-coding 
CPAT coding probability 55.49% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RHOXF1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM70A-1:1
3.1 lnc-FAM70A-1:3
4.0 lnc-RHOXF1-3:2
4.1 lnc-RHOXF1-3:2
5.0 lnc-RHOXF1-3:2
5.1 lnc-CT47A8-10:2
5.2 lnc-RHOXF1-3:2