Transcript: lnc-RHOXF1-3:13

Basic information

LNCipedia transcript ID: lnc-RHOXF1-3:13 
LNCipedia gene ID: lnc-RHOXF1-3
Location (hg38): chrX:120135807-120137053
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 265 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00017540; NONHSAT138367
Alternative gene names: XLOC_008223; linc-RHOXF1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.1105 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RHOXF1-3:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM70A-1:9
3.1 lnc-FAM70A-1:9
4.0 lnc-RHOXF1-3:13
4.1 lnc-RHOXF1-3:13
5.0 lnc-RHOXF1-3:13
5.1 lnc-CT47A8-10:11
5.2 lnc-RHOXF1-3:13