Transcript: lnc-RHOBTB2-2:5

Basic information

LNCipedia transcript ID: lnc-RHOBTB2-2:5 
LNCipedia gene ID: lnc-RHOBTB2-2
RefSeq ID: NR_125433
Location (hg38): chr8:22877972-22888022
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3891 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125433; NR_125433.1
Alternative gene names: LOC101929237


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.3349 non-coding 
CPAT coding probability 4.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RHOBTB2-2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RHOBTB2-2:5
4.0 lnc-RHOBTB2-2:5
4.1 lnc-RHOBTB2-2:5
5.0 lnc-RHOBTB2-2:5
5.1 lnc-RHOBTB2-2:5
5.2 lnc-RHOBTB2-2:5