Transcript: lnc-RHEX-2:1

Basic information

LNCipedia transcript ID: lnc-RHEX-2:1 
LNCipedia gene ID: lnc-RHEX-2
Ensembl Gene ID: ENSG00000226780
Ensembl Transcript ID: ENST00000425896
Location (hg38): chr1:206117783-206126805
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 630 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000716; ENST00000425896.1; RP11-38J22.3-001; OTTHUMT00000087997.1; NONHSAT009044
Alternative gene names: XLOC_001170; linc-SLC26A9-1; ENSG00000226780.1; RP11-38J22.3; OTTHUMG00000036120.1; AC244035.2; AC244035.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -431.2134 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RHEX-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf186-2:1
3.1 lnc-C1orf186-2:1
4.0 lnc-C1orf186-2:1
4.1 lnc-C1orf186-2:1
5.0 lnc-C1orf186-2:1
5.1 lnc-CDK18-17:1
5.2 lnc-RHEX-2:1