Transcript: lnc-RGS9-1:18

Basic information

LNCipedia transcript ID: lnc-RGS9-1:18 
LNCipedia gene ID: lnc-RGS9-1
Ensembl Gene ID: ENSG00000265912
Ensembl Transcript ID: ENST00000583416
Location (hg38): chr17:64943262-64951054
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2474 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583416.1; RP11-583F2.2-001; OTTHUMT00000445719.1; NONHSAT055337
Alternative gene names: ENSG00000265912.1; RP11-583F2.2; OTTHUMG00000179315.1; AC037487.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.4787 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGS9-1:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC037487.1-1:1
4.0 lnc-AC037487.1-1:1
4.1 lnc-AC037487.1-1:1
5.0 lnc-AC037487.1-1:1
5.1 lnc-TANC2-61:1
5.2 lnc-RGS9-1:18