Transcript: lnc-RGS5-1:10

Basic information

LNCipedia transcript ID: lnc-RGS5-1:10 
LNCipedia gene ID: lnc-RGS5-1
Ensembl Gene ID: ENSG00000232995
Ensembl Transcript ID: ENST00000528818
Location (hg38): chr1:163318838-163321741
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 574 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528818.1; RP11-267N12.3-011; OTTHUMT00000388575.1
Alternative gene names: ENSG00000232995.2; RP11-267N12.3; OTTHUMG00000033150.2; ENSG00000232995.3; ENSG00000232995.7; RGS5; AL592435.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.5784 non-coding 
CPAT coding probability 1.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGS5-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RGS5-1:10
4.0 lnc-RGS5-1:10
4.1 lnc-RGS5-1:10
5.0 lnc-RGS5-1:10
5.1 lnc-SH2D1B-22:12
5.2 lnc-RGS5-1:10