Transcript: lnc-RGS3-4:6

Basic information

LNCipedia transcript ID: lnc-RGS3-4:6 
LNCipedia gene ID: lnc-RGS3-4
Ensembl Gene ID: ENSG00000227482
Ensembl Transcript ID: ENST00000428292
Location (hg38): chr9:113650956-113682855
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1223 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428292; ENST00000428292.1; RP11-18B16.2-001; OTTHUMT00000053744.1; NONHSAT134357
Alternative gene names: ENSG00000227482; RP11-18B16.2; ENSG00000227482.1; OTTHUMG00000020530.1; AL157702.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.5181 non-coding 
CPAT coding probability 1.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGS3-4:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RGS3-2:1
3.1 lnc-RGS3-2:1
4.0 lnc-RGS3-2:1
4.1 lnc-RGS3-1:7
5.0 lnc-RGS3-1:7
5.1 lnc-PRPF4-16:6
5.2 lnc-RGS3-4:6