Transcript: lnc-RGPD8-5:3

Basic information

LNCipedia transcript ID: lnc-RGPD8-5:3 
LNCipedia gene ID: lnc-RGPD8-5
Location (hg38): chr2:112576962-112584815
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6927 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000049664.1|MICT00000196939.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 33.6185 non-coding 
CPAT coding probability 1.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RGPD8-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RGPD8-5:3
5.0 lnc-RGPD8-5:3
5.1 lnc-EN1-55:3
5.2 lnc-RGPD8-5:3